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Synthetic Biology Is Changing What We Eat. Here’s What You Need to Know.

May 14, 2019
Civil Eats

by Meg Wilcox

Food + Policy, Food Safety, Technology

Impossible’s “bleeding” veggie burger, shrimp made of algae, and vegan cheesesthat melt are all making their way into restaurants and on to supermarket shelves, offering consumers a new generation of plant-based proteins that look, act, and taste far more like the real thing than ever before.

What consumers may not realize, however, is that many of these new foods are made using synthetic biology, an emerging science that applies principles of genetic engineering to create life forms from scratch.

Originally used to produce medicines, biofuels, and super bacteria designed to eat oil spills, synthetic biology is increasingly being applied to the production of food and fiber—from vegan burgers to “spider silk,” feed for farmed fish, synthetic flavors, and animal-free egg whites. A California accelerator, IndieBio, is helping to churn out many of these new businesses. Synthetic biology applications span from simple gene editing combined with fermentation processes, to cellular meats that culture food products from animal cells in the lab, to gene drive applications intended to change an organism’s genetics in the environment, such as a mosquito’s ability to spread malaria. For purposes of this discussion, we focus on products and processes that rely on gene editing combined with fermentation.

Synthetic biologists identify the gene sequences that give food or fiber certain qualities, like the gooiness of cheese or the tensile strength of silk. Often, it’s a protein produced by plant or animal cells that imparts the desired quality. Once identified, the gene sequence for that protein is created chemically in a lab and inserted into yeast or bacteria cells. Then, much like brewing beer, a fermentation process turns the microbes into tiny factories that mass produce the desired protein—which is then used as a food ingredient or spun into fiber. The Impossible Burger, for example, contains an engineered heme, a protein originally derived from soy plant roots, that gives the burger its pseudo-meat flavor, color, and texture.

Most of the companies using synthetic biology are still in the startup phase and may fail to gain traction, just as the earlier applications of synthetic biology for biofuels failed to reach scale. But there are billions of dollars in funding behind these products, and plenty of desire for them to succeed. And while many synbio products promise to use fewer natural resources, similar to cellular “meat,” a general lack of public information and transparency from many companies about their processes and what their supply chains will entail when brought to scale leaves unanswered questions about the safety and ultimate environmental, economic, and social sustainability of these products.

In the interest of trying to track down answers to some of these questions, Civil Eats asked six companies using synthetic biology, as well as two industry associations—including Bolt Threads, Impossible Foods, Gingko Bioworks, and IndieBio—for comment; although many declined to comment, the answers we received—plus the many questions that remain unanswered—suggest how much we still need to know about the potential impacts of this food of the future.

How it Works: Fish Food as an Example—and a Source of Concern

Each synthetic biology process is unique, but take the example of bacteria-based fish feed produced by KnipBio, the first company of its kind to receive U.S. Food & Drug Administration (FDA) approval as GRAS (“generally recognized as safe”). KnipBio uses a microbe commonly found on leaves that naturally produce carotenoids, anti-oxidants that can be vital for fish health.

Through simple edits to the bacteria’s genetic makeup, KnipBio CEO Larry Feinberg says he can “turn up or turn down the valves to make things of interest,” like variations on the carotenoids. Next, he ferments the microorganisms in a tank, feeding them methanol—an alcohol derived from methane gas—or corn waste by-products to stimulate them to reproduce and make the carotenoids. The fermented bacteria are then pasteurized and dried, which Feinberg says kills them, and formulated into a flour that is milled into fish feed. It has taken KnipBio five years to refine this process.

Critics say that synthetic biology’s dangers lie in the potential release of gene-edited organisms into the wild, human health impacts, and disruption to agricultural communities, should engineered food or fiber displace natural products.

Rebecca Burgess, the founder of Fibershed, which last fall produced a report with ETC Group on the hazards of clothing made from genetically modified or synbio-derived materials, questions the efficacy of methods to keep gene-edited material from getting into the environment. “The concern is that they’re using base life forms that grow rapidly and transfer genes rapidly and they’re not considering the future of genetic pollution.”

Feinberg responded to this concern by saying that ensuring microbes are dead before release outside the lab is “microbiology 101,” like milk pasteurization. Nevertheless, “there should be, and will be, safety redundancy built into containment at an industrial biotech operation,” he adds. Furthermore, Feinberg says that research shows that modified bacteria tend to revert back to their “wild type” when they’re no longer housed in the optimized conditions created in the lab.

Piers Millet, vice president of safety and security at iGem, a non-profit organization that runs a global synthetic biology competition, agrees. “One of synthetic biology’s biggest challenges is getting the new traits to stick past a few generations [which typically last days or weeks]. In almost every case, the alterations you’re making make those organisms less suitable for natural environments.”

That challenge leaves Michael Tlusty, associate professor of sustainability and food solutions at the University of Massachusetts, Boston, “guardedly optimistic” that synthetic biology will have beneficial applications, like the creation of alternative fish feeds to reduce the pressure on forage fish. Tlusty also notes, “we’ve been editing bacteria for a long time, medically, such as for insulin.”

Health Impacts?

Bacterial engineering processes for medicine have been established for 40 years. We’ve also been editing bacteria to create the vegetable rennet in cheeses since 1990. In fact, 90 percent of U.S. cheese today is produced with what’s known as fermentation-produced chymosin, or FPC, a vegetable rennet.

There are no reports of health or environmental impacts from FPC to date, but neither does it appear that anyone has researched the question.

The main health concern with synthetic biology products is that they add new proteins to foods, and those new proteins may be allergenic, says Dana Perls, senior food and agriculture campaigner with Friends of the Earth. “We need to understand the short- and long-term impacts before these ingredients and products enter the market or the environment,” she says of products genetically engineered to replace animal products, and stresses the need for stronger regulations for all genetic engineering.

Most consumers wouldn’t know that the cheese they buy is produced using gene modification, because it isn’t labeled as GMO. The FDA ruled that because FPC was identical to the chymosin found in animal rennet, it didn’t require labeling.

GMO labeling laws in the U.S. don’t apply to products made using synthetic biology, which makes it tough for consumers to make informed choices. Most recently, the FDA announced that labeling isn’t required for ingredients made from GMO crops if no modified genetic material is detectable.

Cell-based meat, which is grown in a lab by multiplying entire stem cells taken from animal muscle, will be regulated by both the FDA and the U.S. Deparment of Agriculture (USDA), though it’s not yet clear what that means in practice.

Synthetic biology is advancing so meteorically, regulatory schemes are hard pressed to keep up, Millet says, adding that, besides national laws, the industry follows World Health Organization biosafety guidance and other international regulations. But that guidance is updated every five years, so there can be a lag before the newest technology will be considered.

“The new wave of genetic engineering is slipping through very large loopholes,” says Perls. “People who are trying to purchase food or clothing that reflects their values are in the dark.”

Social Disruption Ahead?

As a disruptive technology, advocates fear that synthetic biology may also pose harm to the livelihoods of farmers, particularly in the developing world.

Oakland Institute’s Executive Director Anuradha Mittal is especially concerned that the rise of synthetic biology for products such as vanilla, coconut oil, and silk poses a threat to the livelihoods of smallholder and indigenous farmers if those engineered products replace their natural counterparts. Many of these farmers, like the Filipino coconut growers facing super typhoons year after year, are on the front lines of climate change, and Mittal notes that synbio alternatives could increase their vulnerability at a time when they need solid markets to help them adapt to climate change.

“These artificial solutions that are manufactured in petri dishes threaten smallholder farmers,” she told Civil Eats. “The devastation of women’s livelihoods in particular in India would be huge from these fancy silks.”